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biom.table.Table.nonzero_counts

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biom.table.Table.nonzero_counts

Table.nonzero_counts(axis, binary=False)

Get nonzero summaries about an axis

Parameters:

axis : {‘sample’, ‘observation’, ‘whole’}

The axis on which to count nonzero entries

binary : bool, optional

Defaults to False. If False, return number of nonzero entries. If True, sum the values of the entries.

Returns:

numpy.array

Counts in index order to the axis

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