biom.table.Table.nonzero_counts

Table.nonzero_counts(axis, binary=True)

Get nonzero summaries about an axis

Parameters:

axis{‘sample’, ‘observation’, ‘whole’}

The axis on which to count nonzero entries

binarybool, optional

Defaults to True. If True, return number of nonzero entries. If False, sum the values of the entries.

Returns:

numpy.array

Counts in index order to the axis